Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01880.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3536
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32


Found at i:292 original size:3 final size:3

Alignment explanation


    Indices: 284--331  Score: 96
    Period size: 3  Copynumber: 16.0  Consensus size: 3

        274 CTCGGCCATT

                                                                           
        284 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
          1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC

        332 ATCAACTTCA


Statistics
Matches: 45,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   45  1.00

ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67


Consensus pattern (3 bp):   
TTC

Found at i:2864 original size:33 final size:33

Alignment explanation


    Indices: 2822--2889  Score: 136
    Period size: 33  Copynumber: 2.1  Consensus size: 33

       2812 TGAATCCAGA

                                             
       2822 ATCTCTTGAATTGATTGTGTAATCCCTGGTGGC
          1 ATCTCTTGAATTGATTGTGTAATCCCTGGTGGC

                                             
       2855 ATCTCTTGAATTGATTGTGTAATCCCTGGTGGC
          1 ATCTCTTGAATTGATTGTGTAATCCCTGGTGGC

              
       2888 AT
          1 AT

       2890 TTTAGCATTC


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  33   35  1.00

ACGTcount: A:0.19, C:0.18, G:0.24, T:0.40


Consensus pattern (33 bp):   
ATCTCTTGAATTGATTGTGTAATCCCTGGTGGC
Done.