Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01924.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 603

Length: 1006
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28


Found at i:415 original size:6 final size:6

Alignment explanation


    Indices: 404--435  Score: 64
    Period size: 6  Copynumber: 5.3  Consensus size: 6

        394 ACAACATGAT

                                                 
        404 GAGCAA GAGCAA GAGCAA GAGCAA GAGCAA GA
          1 GAGCAA GAGCAA GAGCAA GAGCAA GAGCAA GA

        436 TGATGAATCC


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   26  1.00

ACGTcount: A:0.50, C:0.16, G:0.34, T:0.00


Consensus pattern (6 bp):   
GAGCAA

Done.