Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01927.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 614

Length: 1024
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.30


Found at i:329 original size:29 final size:29

Alignment explanation


    Indices: 287--345  Score: 109
    Period size: 29  Copynumber: 2.0  Consensus size: 29

        277 CAATGCAAAG

                                         
        287 ATAAGTTTTTACTTCAAAGTGTGGTCACT
          1 ATAAGTTTTTACTTCAAAGTGTGGTCACT

                             *           
        316 ATAAGTTTTTACTTCAACGTGTGGTCACT
          1 ATAAGTTTTTACTTCAAAGTGTGGTCACT

             
        345 A
          1 A

        346 GTCCCGGAGC


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.27, C:0.15, G:0.17, T:0.41


Consensus pattern (29 bp):   
ATAAGTTTTTACTTCAAAGTGTGGTCACT
Done.