Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga12g01937.F6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4314
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Found at i:4256 original size:175 final size:175
Alignment explanation
Indices: 3965--4314 Score: 700
Period size: 175 Copynumber: 2.0 Consensus size: 175
3955 TCAAAACGTA
3965 TGTAAGGTTATATTAGTAATTAGGTTTTAAGAAAAATAAAGTCATCCATTTTGTTACTCTTTTCC
1 TGTAAGGTTATATTAGTAATTAGGTTTTAAGAAAAATAAAGTCATCCATTTTGTTACTCTTTTCC
4030 TATTTTCACAGTTCTAGGAAACGGTTCTTCTCCACGATTTCTCTCTTTTTTATTCAGATATCCCA
66 TATTTTCACAGTTCTAGGAAACGGTTCTTCTCCACGATTTCTCTCTTTTTTATTCAGATATCCCA
4095 ATTTTATTTTTATTATTTATTATTTTCTCTCATGTAAATAATATT
131 ATTTTATTTTTATTATTTATTATTTTCTCTCATGTAAATAATATT
4140 TGTAAGGTTATATTAGTAATTAGGTTTTAAGAAAAATAAAGTCATCCATTTTGTTACTCTTTTCC
1 TGTAAGGTTATATTAGTAATTAGGTTTTAAGAAAAATAAAGTCATCCATTTTGTTACTCTTTTCC
4205 TATTTTCACAGTTCTAGGAAACGGTTCTTCTCCACGATTTCTCTCTTTTTTATTCAGATATCCCA
66 TATTTTCACAGTTCTAGGAAACGGTTCTTCTCCACGATTTCTCTCTTTTTTATTCAGATATCCCA
4270 ATTTTATTTTTATTATTTATTATTTTCTCTCATGTAAATAATATT
131 ATTTTATTTTTATTATTTATTATTTTCTCTCATGTAAATAATATT
Statistics
Matches: 175, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
175 175 1.00
ACGTcount: A:0.27, C:0.15, G:0.10, T:0.48
Consensus pattern (175 bp):
TGTAAGGTTATATTAGTAATTAGGTTTTAAGAAAAATAAAGTCATCCATTTTGTTACTCTTTTCC
TATTTTCACAGTTCTAGGAAACGGTTCTTCTCCACGATTTCTCTCTTTTTTATTCAGATATCCCA
ATTTTATTTTTATTATTTATTATTTTCTCTCATGTAAATAATATT
Done.