Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01944.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 943

Length: 1573
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31


Found at i:538 original size:17 final size:17

Alignment explanation


    Indices: 518--551  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        508 TGCAGGAGTC

                             
        518 TGTCAAAATTTGGAGAA
          1 TGTCAAAATTTGGAGAA

                             
        535 TGTCAAAATTTGGAGAA
          1 TGTCAAAATTTGGAGAA

        552 AAAGGGAAGT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.41, C:0.06, G:0.24, T:0.29


Consensus pattern (17 bp):   
TGTCAAAATTTGGAGAA
Done.