Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01951.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3966
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31


Found at i:2100 original size:12 final size:12

Alignment explanation


    Indices: 2083--2123  Score: 52
    Period size: 12  Copynumber: 3.7  Consensus size: 12

       2073 GGAGATAGGA

                        
       2083 AAAACAGGTTCC
          1 AAAACAGGTTCC

                       *
       2095 AAAACAGG---A
          1 AAAACAGGTTCC

                        
       2104 AAAACAGGTTCC
          1 AAAACAGGTTCC

                    
       2116 AAAACAGG
          1 AAAACAGG

       2124 AAAAACAGTG


Statistics
Matches: 24,  Mismatches: 2, Indels: 6
        0.75            0.06        0.19

Matches are distributed among these distances:
   9    8  0.33
  12   16  0.67

ACGTcount: A:0.51, C:0.20, G:0.20, T:0.10


Consensus pattern (12 bp):   
AAAACAGGTTCC

Found at i:2104 original size:21 final size:21

Alignment explanation


    Indices: 2079--2131  Score: 106
    Period size: 21  Copynumber: 2.5  Consensus size: 21

       2069 CAGTGGAGAT

                                 
       2079 AGGAAAAACAGGTTCCAAAAC
          1 AGGAAAAACAGGTTCCAAAAC

                                 
       2100 AGGAAAAACAGGTTCCAAAAC
          1 AGGAAAAACAGGTTCCAAAAC

                       
       2121 AGGAAAAACAG
          1 AGGAAAAACAG

       2132 TGGCTGTAGG


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   32  1.00

ACGTcount: A:0.55, C:0.17, G:0.21, T:0.08


Consensus pattern (21 bp):   
AGGAAAAACAGGTTCCAAAAC
Done.