Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01965.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4484
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33


Found at i:3075 original size:32 final size:31

Alignment explanation


    Indices: 3011--3073  Score: 126
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       3001 TATGTCCTTG

                                           
       3011 ATACGTTTTCAGGTTTTTTTGCTTTCCAAAA
          1 ATACGTTTTCAGGTTTTTTTGCTTTCCAAAA

                                           
       3042 ATACGTTTTCAGGTTTTTTTGCTTTCCAAAA
          1 ATACGTTTTCAGGTTTTTTTGCTTTCCAAAA

             
       3073 A
          1 A

       3074 ATGGCATATG


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   32  1.00

ACGTcount: A:0.24, C:0.16, G:0.13, T:0.48


Consensus pattern (31 bp):   
ATACGTTTTCAGGTTTTTTTGCTTTCCAAAA
Done.