Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga12g01971.M1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6204
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.34
Found at i:4643 original size:7 final size:7
Alignment explanation
Indices: 4632--4674 Score: 68
Period size: 7 Copynumber: 6.1 Consensus size: 7
4622 CAATTACAGT
*
4632 TTGCTTT
1 TTGCTTC
4639 TTGCTTC
1 TTGCTTC
*
4646 TTACTTC
1 TTGCTTC
4653 TTGCTTC
1 TTGCTTC
4660 TTGCTTC
1 TTGCTTC
4667 TTGCTTC
1 TTGCTTC
4674 T
1 T
4675 GTAAGTGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.02, C:0.26, G:0.12, T:0.60
Consensus pattern (7 bp):
TTGCTTC
Found at i:6039 original size:42 final size:42
Alignment explanation
Indices: 5986--6071 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
5976 CCTTTTTGAG
* *
5986 TTATCTGATTTCCCAGTTAAGATTATACCTCTGAAATGAGTT
1 TTATCTAATTTCCCAGGTAAGATTATACCTCTGAAATGAGTT
6028 TTATCTAATTTCCCAGGTAAGATTATACCTCTGAAATGAGTT
1 TTATCTAATTTCCCAGGTAAGATTATACCTCTGAAATGAGTT
6070 TT
1 TT
6072 CTCTGCTGCA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (42 bp):
TTATCTAATTTCCCAGGTAAGATTATACCTCTGAAATGAGTT
Done.