Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01978.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 495

Length: 826
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33


Found at i:144 original size:27 final size:27

Alignment explanation


    Indices: 91--147  Score: 69
    Period size: 27  Copynumber: 2.1  Consensus size: 27

         81 CTCTACATCA

                                  *    
         91 TCGACCCGACCATCTACTACATGGCCG
          1 TCGACCCGACCATCTACTACATCGCCG

                 *   *        * *      
        118 TCGACTCGAGCATCTACTGCGTCGCCG
          1 TCGACCCGACCATCTACTACATCGCCG

               
        145 TCG
          1 TCG

        148 TAGTCCTCTG


Statistics
Matches: 25,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  27   25  1.00

ACGTcount: A:0.18, C:0.39, G:0.23, T:0.21


Consensus pattern (27 bp):   
TCGACCCGACCATCTACTACATCGCCG
Done.