Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga12g01996.F3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3061
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.33
Found at i:727 original size:232 final size:232
Alignment explanation
Indices: 321--765 Score: 845
Period size: 232 Copynumber: 1.9 Consensus size: 232
311 CCTGATATGG
321 TTTAGGCATCCATTGGAAACTTGAATTACAACCCTGAATCAACTTTAGCAATAGCAAAAGTCTAG
1 TTTAGGCATCCATTGGAAACTTGAATTACAACCCTGAATCAACTTTAGCAATAGCAAAAGTCTAG
386 CACCTGGATTGTTTGAAATGCTCATTAAAATGCCTTTTGAAAGAAAGAAAAGAATATGACGAGTC
66 CACCTGGATTGTTTGAAATGCTCATTAAAATGCCTTTTGAAAGAAAGAAAAGAATATGACGAGTC
* *
451 AAGATTTCTTAGGATTCTATGCTTAAAGTATATGCCTCAACCCCTAGAGAAGGCAGTTGGAACAA
131 AAGATTTCTTAGGAATCTATGCTTAAAGTATATGCCTCAACCCCTAGAGAAGGCAATTGGAACAA
516 AACTCAGCAATCAAGGGTTTTCGGCAACTGTATCAAC
196 AACTCAGCAATCAAGGGTTTTCGGCAACTGTATCAAC
553 TTTAGGCATCCATTGGAAACTTGAATTACAACCCTGAATCAACTTTAGCAATAGCAAAAGTCTAG
1 TTTAGGCATCCATTGGAAACTTGAATTACAACCCTGAATCAACTTTAGCAATAGCAAAAGTCTAG
* *
618 CATCTGGATTGTTTGAAATGCTCATTAAAATGCCTTTTGAAAGAAAGAAAAGAATATGATGAGTC
66 CACCTGGATTGTTTGAAATGCTCATTAAAATGCCTTTTGAAAGAAAGAAAAGAATATGACGAGTC
683 AAGATTTCTTAGGAATCTATGCTTAAAGTATATGCCTCAACCCCTAGAGAAGGCAATTGGAACAA
131 AAGATTTCTTAGGAATCTATGCTTAAAGTATATGCCTCAACCCCTAGAGAAGGCAATTGGAACAA
*
748 AACTCAGCCATCAAGGGT
196 AACTCAGCAATCAAGGGT
766 GTGGGTTATC
Statistics
Matches: 208, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
232 208 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.27
Consensus pattern (232 bp):
TTTAGGCATCCATTGGAAACTTGAATTACAACCCTGAATCAACTTTAGCAATAGCAAAAGTCTAG
CACCTGGATTGTTTGAAATGCTCATTAAAATGCCTTTTGAAAGAAAGAAAAGAATATGACGAGTC
AAGATTTCTTAGGAATCTATGCTTAAAGTATATGCCTCAACCCCTAGAGAAGGCAATTGGAACAA
AACTCAGCAATCAAGGGTTTTCGGCAACTGTATCAAC
Done.