Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01996.R1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2495
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31


Found at i:837 original size:288 final size:288

Alignment explanation


    Indices: 321--875  Score: 1065
    Period size: 288  Copynumber: 1.9  Consensus size: 288

        311 CCTGATATGG

                                                                             
        321 TTTAGGCATCCATTGGAAACTTGAATTACAACCCTGAATCAACTTTAGCAATAGCAAAAGTCTAG
          1 TTTAGGCATCCATTGGAAACTTGAATTACAACCCTGAATCAACTTTAGCAATAGCAAAAGTCTAG

                                                                             
        386 CACCTGGATTGTTTGAAATGCTCATTAAAATGCCTTTTGAAAGAAAGAAAAGAATATGACGAGTC
         66 CACCTGGATTGTTTGAAATGCTCATTAAAATGCCTTTTGAAAGAAAGAAAAGAATATGACGAGTC

                          *                                        *         
        451 AAGATTTCTTAGGATTCTATGCTTAAAGTATATGCCTCAACCCCTAGAGAAGGCAGTTGGAACAA
        131 AAGATTTCTTAGGAATCTATGCTTAAAGTATATGCCTCAACCCCTAGAGAAGGCAATTGGAACAA

                                                                             
        516 AACTCAGCAATCAAGGTAAAAGATCTAACAAGATAATCAGTTTCAAAATTGATGGTAATAACTTG
        196 AACTCAGCAATCAAGGTAAAAGATCTAACAAGATAATCAGTTTCAAAATTGATGGTAATAACTTG

                                        
        581 AGTTTGGGTTTTCGGCAACTGTATCAAC
        261 AGTTTGGGTTTTCGGCAACTGTATCAAC

                                                                             
        609 TTTAGGCATCCATTGGAAACTTGAATTACAACCCTGAATCAACTTTAGCAATAGCAAAAGTCTAG
          1 TTTAGGCATCCATTGGAAACTTGAATTACAACCCTGAATCAACTTTAGCAATAGCAAAAGTCTAG

              *                                                        *     
        674 CATCTGGATTGTTTGAAATGCTCATTAAAATGCCTTTTGAAAGAAAGAAAAGAATATGATGAGTC
         66 CACCTGGATTGTTTGAAATGCTCATTAAAATGCCTTTTGAAAGAAAGAAAAGAATATGACGAGTC

                                                                             
        739 AAGATTTCTTAGGAATCTATGCTTAAAGTATATGCCTCAACCCCTAGAGAAGGCAATTGGAACAA
        131 AAGATTTCTTAGGAATCTATGCTTAAAGTATATGCCTCAACCCCTAGAGAAGGCAATTGGAACAA

                    *                                                        
        804 AACTCAGCCATCAAGGTAAAAGATCTAACAAGATAATCAGTTTCAAAATTGATGGTAATAACTTG
        196 AACTCAGCAATCAAGGTAAAAGATCTAACAAGATAATCAGTTTCAAAATTGATGGTAATAACTTG

                   
        869 AGTTTGG
        261 AGTTTGG

        876 TAAGATTCCT


Statistics
Matches: 262,  Mismatches: 5, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 288  262  1.00

ACGTcount: A:0.37, C:0.16, G:0.18, T:0.28


Consensus pattern (288 bp):   
TTTAGGCATCCATTGGAAACTTGAATTACAACCCTGAATCAACTTTAGCAATAGCAAAAGTCTAG
CACCTGGATTGTTTGAAATGCTCATTAAAATGCCTTTTGAAAGAAAGAAAAGAATATGACGAGTC
AAGATTTCTTAGGAATCTATGCTTAAAGTATATGCCTCAACCCCTAGAGAAGGCAATTGGAACAA
AACTCAGCAATCAAGGTAAAAGATCTAACAAGATAATCAGTTTCAAAATTGATGGTAATAACTTG
AGTTTGGGTTTTCGGCAACTGTATCAAC
Done.