Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02002.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 978

Length: 1631
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28


Found at i:144 original size:11 final size:11

Alignment explanation


    Indices: 111--144  Score: 50
    Period size: 11  Copynumber: 3.1  Consensus size: 11

        101 TAGGGTTGGG

                       
        111 TTTTTTCTTTT
          1 TTTTTTCTTTT

            **         
        122 CCTTTTCTTTT
          1 TTTTTTCTTTT

                       
        133 TTTTTTCTTTT
          1 TTTTTTCTTTT

             
        144 T
          1 T

        145 GAGGCAGGGG


Statistics
Matches: 19,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  11   19  1.00

ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85


Consensus pattern (11 bp):   
TTTTTTCTTTT
Done.