Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02027.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3077
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.34


Found at i:1074 original size:32 final size:32

Alignment explanation


    Indices: 1030--1094  Score: 112
    Period size: 32  Copynumber: 2.0  Consensus size: 32

       1020 ATTGGTACTT

                   *                        
       1030 TTGAACTTATGGATATATGTAAATATGACATG
          1 TTGAACTAATGGATATATGTAAATATGACATG

                                       *    
       1062 TTGAACTAATGGATATATGTAAATATGGCATG
          1 TTGAACTAATGGATATATGTAAATATGACATG

             
       1094 T
          1 T

       1095 ATAGGCTAGA


Statistics
Matches: 31,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  32   31  1.00

ACGTcount: A:0.37, C:0.06, G:0.20, T:0.37


Consensus pattern (32 bp):   
TTGAACTAATGGATATATGTAAATATGACATG

Found at i:2634 original size:19 final size:19

Alignment explanation


    Indices: 2596--2634  Score: 51
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       2586 AACGGACATA

                          **   
       2596 AAAATCTTGACATGGCATG
          1 AAAATCTTGACATGAAATG

                      *        
       2615 AAAATCTTGAGATGAAATG
          1 AAAATCTTGACATGAAATG

             
       2634 A
          1 A

       2635 TAATGACTTG


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  19   17  1.00

ACGTcount: A:0.44, C:0.10, G:0.21, T:0.26


Consensus pattern (19 bp):   
AAAATCTTGACATGAAATG
Done.