Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02027.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 625

Length: 1042
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.32


Found at i:599 original size:19 final size:19

Alignment explanation


    Indices: 561--599  Score: 51
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        551 AACGGACATA

                          **   
        561 AAAATCTTGACATGGCATG
          1 AAAATCTTGACATGAAATG

                      *        
        580 AAAATCTTGAGATGAAATG
          1 AAAATCTTGACATGAAATG

             
        599 A
          1 A

        600 TAATGACTTG


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  19   17  1.00

ACGTcount: A:0.44, C:0.10, G:0.21, T:0.26


Consensus pattern (19 bp):   
AAAATCTTGACATGAAATG
Done.