Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02037.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 825

Length: 1376
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32


Found at i:1121 original size:45 final size:45

Alignment explanation


    Indices: 997--1194  Score: 166
    Period size: 45  Copynumber: 4.4  Consensus size: 45

        987 CCTGCATTAG

                  *           * *      *               *   
        997 GGAAACATCTTGTTTCCTCTGTCCATATCCTGTTGCTA--GCATCAA
          1 GGAAACTTCTTGTTTCCTATATCCATAGCCTGTT--TACGGCACCAA

            *                      * * *        *        
       1042 CGAAACTTCTTGTTTCCTATATCTACATCCTGTTTATGGCACCAA
          1 GGAAACTTCTTGTTTCCTATATCCATAGCCTGTTTACGGCACCAA

                   *          *          *     *    *   *
       1087 GGAAACTCCTTGTTTCCTGTATCCATAGCATGTTTCCGGCTCCAT
          1 GGAAACTTCTTGTTTCCTATATCCATAGCCTGTTTACGGCACCAA

                              *                *    **  *
       1132 GGAAACTTCTTGTTTCCTTTATCCATAGCCTGTTTCCGGCTTCAT
          1 GGAAACTTCTTGTTTCCTATATCCATAGCCTGTTTACGGCACCAA

                      *       
       1177 GGAAACTTCTCGTTTCCT
          1 GGAAACTTCTTGTTTCCT

       1195 GCACCTGTAG


Statistics
Matches: 128,  Mismatches: 23, Indels: 4
        0.83            0.15        0.03

Matches are distributed among these distances:
  43    2  0.02
  45  126  0.98

ACGTcount: A:0.20, C:0.27, G:0.15, T:0.38


Consensus pattern (45 bp):   
GGAAACTTCTTGTTTCCTATATCCATAGCCTGTTTACGGCACCAA
Done.