Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga12g02041.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4106
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Found at i:1937 original size:158 final size:158
Alignment explanation
Indices: 1649--1967 Score: 611
Period size: 158 Copynumber: 2.0 Consensus size: 158
1639 TTTGTTAATT
*
1649 CCTTCTTTTGAAACTTCATGTTCAAATCTTTATGTCACGTCCAAATTATTGTCATGGAATGCAAC
1 CCTTCTTTTGAAACTTCATGTTCAAATCTTTACGTCACGTCCAAATTATTGTCATGGAATGCAAC
1714 AACAATTTGGATGCAGAGAAGTTCATCTTCTCTGCAAAGTTTACTTGTTTAGAAATGGAGAAGCT
66 AACAATTTGGATGCAGAGAAGTTCATCTTCTCTGCAAAGTTTACTTGTTTAGAAATGGAGAAGCT
*
1779 CAATTCTGAGCGTAATACAAGATGCCTG
131 CAATTCTGAGCCTAATACAAGATGCCTG
*
1807 CCTTCTTTTGAAACTTCATGTTCAAATCTTTACGTTACGTCCAAATTATTGTCATGGAATGCAAC
1 CCTTCTTTTGAAACTTCATGTTCAAATCTTTACGTCACGTCCAAATTATTGTCATGGAATGCAAC
1872 AACAATTTGGATGCAGAGAAGTTCATCTTCTCTGCAAAGTTTACTTGTTTAGAAATGGAGAAGCT
66 AACAATTTGGATGCAGAGAAGTTCATCTTCTCTGCAAAGTTTACTTGTTTAGAAATGGAGAAGCT
1937 CAATTCTGAGCCTAATACAAGATGCCTG
131 CAATTCTGAGCCTAATACAAGATGCCTG
1965 CCT
1 CCT
1968 ATGCACCAGG
Statistics
Matches: 158, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
158 158 1.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (158 bp):
CCTTCTTTTGAAACTTCATGTTCAAATCTTTACGTCACGTCCAAATTATTGTCATGGAATGCAAC
AACAATTTGGATGCAGAGAAGTTCATCTTCTCTGCAAAGTTTACTTGTTTAGAAATGGAGAAGCT
CAATTCTGAGCCTAATACAAGATGCCTG
Done.