Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02046.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1799
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.31


Found at i:1318 original size:97 final size:97

Alignment explanation


    Indices: 1152--1348  Score: 394
    Period size: 97  Copynumber: 2.0  Consensus size: 97

       1142 CATATCAGAA

                                                                             
       1152 AGGGAACAATCAAAGAATGGGTAAGATGTAACAAAAGCATGGATTATGACTATGATGTTGCTAGT
          1 AGGGAACAATCAAAGAATGGGTAAGATGTAACAAAAGCATGGATTATGACTATGATGTTGCTAGT

                                            
       1217 GTTGTAAGCTATCATCTATGTCTCAATACAAG
         66 GTTGTAAGCTATCATCTATGTCTCAATACAAG

                                                                             
       1249 AGGGAACAATCAAAGAATGGGTAAGATGTAACAAAAGCATGGATTATGACTATGATGTTGCTAGT
          1 AGGGAACAATCAAAGAATGGGTAAGATGTAACAAAAGCATGGATTATGACTATGATGTTGCTAGT

                                            
       1314 GTTGTAAGCTATCATCTATGTCTCAATACAAG
         66 GTTGTAAGCTATCATCTATGTCTCAATACAAG

               
       1346 AGG
          1 AGG

       1349 TTACCGAGCT


Statistics
Matches: 100,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  97  100  1.00

ACGTcount: A:0.37, C:0.12, G:0.23, T:0.27


Consensus pattern (97 bp):   
AGGGAACAATCAAAGAATGGGTAAGATGTAACAAAAGCATGGATTATGACTATGATGTTGCTAGT
GTTGTAAGCTATCATCTATGTCTCAATACAAG
Done.