Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02046.C2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1821
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.31


Found at i:1308 original size:119 final size:119

Alignment explanation


    Indices: 1152--1391  Score: 480
    Period size: 119  Copynumber: 2.0  Consensus size: 119

       1142 CATATCAGAA

                                                                             
       1152 AGGGAACAATCAAAGAATGGGTAAGATGTAACAAAAGCATGGATTATGACTATGATGTTGCTAGT
          1 AGGGAACAATCAAAGAATGGGTAAGATGTAACAAAAGCATGGATTATGACTATGATGTTGCTAGT

                                                                  
       1217 GTTGTAAGCTATCATCTATGTCTCAATACAAGAGGTTACCGAGCTCTAATATAC
         66 GTTGTAAGCTATCATCTATGTCTCAATACAAGAGGTTACCGAGCTCTAATATAC

                                                                             
       1271 AGGGAACAATCAAAGAATGGGTAAGATGTAACAAAAGCATGGATTATGACTATGATGTTGCTAGT
          1 AGGGAACAATCAAAGAATGGGTAAGATGTAACAAAAGCATGGATTATGACTATGATGTTGCTAGT

                                                                  
       1336 GTTGTAAGCTATCATCTATGTCTCAATACAAGAGGTTACCGAGCTCTAATATAC
         66 GTTGTAAGCTATCATCTATGTCTCAATACAAGAGGTTACCGAGCTCTAATATAC

              
       1390 AG
          1 AG

       1392 TGGTGATCAT


Statistics
Matches: 121,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 119  121  1.00

ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28


Consensus pattern (119 bp):   
AGGGAACAATCAAAGAATGGGTAAGATGTAACAAAAGCATGGATTATGACTATGATGTTGCTAGT
GTTGTAAGCTATCATCTATGTCTCAATACAAGAGGTTACCGAGCTCTAATATAC
Done.