Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02046.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2066
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31


Found at i:1607 original size:119 final size:119

Alignment explanation


    Indices: 1396--1636  Score: 482
    Period size: 119  Copynumber: 2.0  Consensus size: 119

       1386 TGTTGAATAC

                                                                             
       1396 CAGGGAACAATCAAAGAATGGGTAAGATGTAACAAAAGCATGGATTATGACTATGATGTTGCTAG
          1 CAGGGAACAATCAAAGAATGGGTAAGATGTAACAAAAGCATGGATTATGACTATGATGTTGCTAG

                                                                  
       1461 TGTTGTAAGCTATCATCTATGTCTCAATACAAGAGGTTACCGAGCTCTAATATA
         66 TGTTGTAAGCTATCATCTATGTCTCAATACAAGAGGTTACCGAGCTCTAATATA

                                                                             
       1515 CAGGGAACAATCAAAGAATGGGTAAGATGTAACAAAAGCATGGATTATGACTATGATGTTGCTAG
          1 CAGGGAACAATCAAAGAATGGGTAAGATGTAACAAAAGCATGGATTATGACTATGATGTTGCTAG

                                                                  
       1580 TGTTGTAAGCTATCATCTATGTCTCAATACAAGAGGTTACCGAGCTCTAATATA
         66 TGTTGTAAGCTATCATCTATGTCTCAATACAAGAGGTTACCGAGCTCTAATATA

               
       1634 CAG
          1 CAG

       1637 TGGTGATCAT


Statistics
Matches: 122,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 119  122  1.00

ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27


Consensus pattern (119 bp):   
CAGGGAACAATCAAAGAATGGGTAAGATGTAACAAAAGCATGGATTATGACTATGATGTTGCTAG
TGTTGTAAGCTATCATCTATGTCTCAATACAAGAGGTTACCGAGCTCTAATATA
Done.