Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02048.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 783

Length: 1306
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.33


Found at i:1082 original size:179 final size:179

Alignment explanation


    Indices: 623--1201  Score: 838
    Period size: 180  Copynumber: 3.2  Consensus size: 179

        613 TCCATTTTCA

                    **               *                   *            *  *   
        623 ATCTGCTCTACTGCAACTTCAGGGAAATAAAATCTTCAATTCTCAATCTGCTTCCTTGTTATCTC
          1 ATCTGCTCCGCTGCAACTTCAGGGAGATAAAATCTTCAATTCTCAGTCTGCTTCCTTGCTACCTC

                                            *                            **  
        688 AGAAAGATAAGACTCATTCTTCAACCTGCTCTTTTGCTACCTCAGAGAGATAAGGCTTGGTAATA
         66 AGAAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTTGGTGGT-

                  *          *                *          **   
        753 AAATCTACTCCATTGCCAATACATGGAGATAAGACTCACCATCTGTGAAG
        130 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTGCAAAG

                                                *                            
        803 ATCTGCTCCGCTGCAACTTCAGGGAGATAAAATCTTTAATTCTCAGTCTGCTTCCTTGCTACCTC
          1 ATCTGCTCCGCTGCAACTTCAGGGAGATAAAATCTTCAATTCTCAGTCTGCTTCCTTGCTACCTC

                                   *               *               *   *     
        868 AGAAAGATAAGACTCATTCTTCATCCTGCTCTCTTGCTATCTCAGAGAGATAAGGTTTGATGGTA
         66 AGAAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTTGGTGGTA

                            *                           *     
        933 ACATCTGCTCCATTGCTGATACATGGAGATAAGATTCACCATC-ACAAAG
        131 A-ATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTGCAAAG

                *                         *   *                              
        982 ATCTACTCCGCTGCAACTTCAGGGAGATAATATCCTCAATTCTCAGTCTGCTTCCTTGCTACCTC
          1 ATCTGCTCCGCTGCAACTTCAGGGAGATAAAATCTTCAATTCTCAGTCTGCTTCCTTGCTACCTC

                                 *     **                     *              
       1047 AGAAAGATAAGACTCATTCTTTAACCTATTCTCTTGCTACCTCAGAGAGACAAGGCTTGGTGGTG
         66 AGAAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTTGGTGGT-

                                                               
       1112 AAATCTGCTCCATTGCCGATACATGGAGATAA-ATTTCACCATCTGCAAAG
        130 AAATCTGCTCCATTGCCGATACATGGAGATAAGA-TTCACCATCTGCAAAG

                                 *        *         
       1162 ATCTGCTCCGCTGCAACTTCAAGGAGATAAGATCTTCAAT
          1 ATCTGCTCCGCTGCAACTTCAGGGAGATAAAATCTTCAAT

       1202 CTTTACCAAT


Statistics
Matches: 356,  Mismatches: 39, Indels: 8
        0.88            0.10        0.02

Matches are distributed among these distances:
 178    1  0.00
 179  160  0.45
 180  195  0.55

ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30


Consensus pattern (179 bp):   
ATCTGCTCCGCTGCAACTTCAGGGAGATAAAATCTTCAATTCTCAGTCTGCTTCCTTGCTACCTC
AGAAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTTGGTGGTA
AATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTGCAAAG
Done.