Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02068.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3073
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22


Found at i:2259 original size:111 final size:111

Alignment explanation


    Indices: 1986--2259  Score: 304
    Period size: 111  Copynumber: 2.5  Consensus size: 111

       1976 GCAGGCAACG

                    * *          *  *         *  **   *                 *   *
       1986 TTACCGACGATGAAAATGCAGTTCGGAATGAGAAAAACACTTTCCAGAACTT---GAACATCAAT
          1 TTACCGACAACGAAAATGCAGGTCAGAATGAGAATAATGCTTCCCAGAACTTAAAGAACAACAAC

                            *            **               
       2048 AACAATGAGAATGCAGGCCAAAATGAGAACGATGCTGCTCAGAGCA
         66 AACAATGAGAATGCAGACCAAAATGAGAAAAATGCTGCTCAGAGCA

               **      *        *              *       *                     
       2094 TTAGTGACAACAAAAATGCAAGTCAGAATGAGAATGATGCTTCTCAGAGA-TTAAAGAACAACAA
          1 TTACCGACAACGAAAATGCAGGTCAGAATGAGAATAATGCTTCCCAGA-ACTTAAAGAACAACAA

                       *        *                   *      
       2158 CAACAATGAGAGTGCAGACCGAAATGAGAAAAATGCTGCTGAGAGCA
         65 CAACAATGAGAATGCAGACCAAAATGAGAAAAATGCTGCTCAGAGCA

                         *                                         
       2205 TTACCGACAACGAGAATGCAGGTCAGAATGAGAATAATGCTTCCCAGAACTTAAA
          1 TTACCGACAACGAAAATGCAGGTCAGAATGAGAATAATGCTTCCCAGAACTTAAA

       2260 TAACGATGGA


Statistics
Matches: 132,  Mismatches: 29, Indels: 7
        0.79            0.17        0.04

Matches are distributed among these distances:
 108   36  0.27
 109    1  0.01
 110    1  0.01
 111   94  0.71

ACGTcount: A:0.42, C:0.18, G:0.22, T:0.18


Consensus pattern (111 bp):   
TTACCGACAACGAAAATGCAGGTCAGAATGAGAATAATGCTTCCCAGAACTTAAAGAACAACAAC
AACAATGAGAATGCAGACCAAAATGAGAAAAATGCTGCTCAGAGCA
Done.