Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02071.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1857
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.33


Found at i:234 original size:5 final size:5

Alignment explanation


    Indices: 214--250  Score: 56
    Period size: 5  Copynumber: 7.2  Consensus size: 5

        204 CCCAACTGTT

                      *                                 
        214 CCAAC TCCATC CCAAC CCAAC CCAAC CCAAC CCAAC C
          1 CCAAC -CCAAC CCAAC CCAAC CCAAC CCAAC CCAAC C

        251 TCATTTTCAG


Statistics
Matches: 29,  Mismatches: 2, Indels: 1
        0.91            0.06        0.03

Matches are distributed among these distances:
   5   25  0.86
   6    4  0.14

ACGTcount: A:0.35, C:0.59, G:0.00, T:0.05


Consensus pattern (5 bp):   
CCAAC

Done.