Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00633.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 337

Length: 563
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.34


Found at i:455 original size:11 final size:11

Alignment explanation


    Indices: 435--463  Score: 51
    Period size: 11  Copynumber: 2.7  Consensus size: 11

        425 CTGTTAATGC

                       
        435 TTTC-TTTTTT
          1 TTTCTTTTTTT

                       
        445 TTTCTTTTTTT
          1 TTTCTTTTTTT

                    
        456 TTTCTTTT
          1 TTTCTTTT

        464 ATCTCTATTC


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  10    4  0.22
  11   14  0.78

ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90


Consensus pattern (11 bp):   
TTTCTTTTTTT
Done.