Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga12g02104.F3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3351
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Found at i:1024 original size:251 final size:251
Alignment explanation
Indices: 581--1085 Score: 1010
Period size: 251 Copynumber: 2.0 Consensus size: 251
571 CTCTTGCACG
581 GTATAAAGAGATTGTTCCGCACATAAAGTTGGCAGGTTTTGAACATCTTTCCTTCTATTCTGTTC
1 GTATAAAGAGATTGTTCCGCACATAAAGTTGGCAGGTTTTGAACATCTTTCCTTCTATTCTGTTC
646 AATTTATTTAAGCACTTTCTAGGCCATACACTGTTGTGGTTTACATATCTATCCTTGTCTTCTAA
66 AATTTATTTAAGCACTTTCTAGGCCATACACTGTTGTGGTTTACATATCTATCCTTGTCTTCTAA
711 TTTCTTTGGCAGAGAAATTGTTCTAAATTTCATGAGTATCATATACTTTTATTTCTTGAAATATT
131 TTTCTTTGGCAGAGAAATTGTTCTAAATTTCATGAGTATCATATACTTTTATTTCTTGAAATATT
776 AATGCTCATGAATAGTAACTAGTATGAAACAAATTATATACTCATAAAGCAATTGT
196 AATGCTCATGAATAGTAACTAGTATGAAACAAATTATATACTCATAAAGCAATTGT
832 GTATAAAGAGATTGTTCCGCACATAAAGTTGGCAGGTTTTGAACATCTTTCCTTCTATTCTGTTC
1 GTATAAAGAGATTGTTCCGCACATAAAGTTGGCAGGTTTTGAACATCTTTCCTTCTATTCTGTTC
897 AATTTATTTAAGCACTTTCTAGGCCATACACTGTTGTGGTTTACATATCTATCCTTGTCTTCTAA
66 AATTTATTTAAGCACTTTCTAGGCCATACACTGTTGTGGTTTACATATCTATCCTTGTCTTCTAA
962 TTTCTTTGGCAGAGAAATTGTTCTAAATTTCATGAGTATCATATACTTTTATTTCTTGAAATATT
131 TTTCTTTGGCAGAGAAATTGTTCTAAATTTCATGAGTATCATATACTTTTATTTCTTGAAATATT
1027 AATGCTCATGAATAGTAACTAGTATGAAACAAATTATATACTCATAAAGCAATTGT
196 AATGCTCATGAATAGTAACTAGTATGAAACAAATTATATACTCATAAAGCAATTGT
1083 GTA
1 GTA
1086 AGCATAAATG
Statistics
Matches: 254, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
251 254 1.00
ACGTcount: A:0.30, C:0.15, G:0.14, T:0.40
Consensus pattern (251 bp):
GTATAAAGAGATTGTTCCGCACATAAAGTTGGCAGGTTTTGAACATCTTTCCTTCTATTCTGTTC
AATTTATTTAAGCACTTTCTAGGCCATACACTGTTGTGGTTTACATATCTATCCTTGTCTTCTAA
TTTCTTTGGCAGAGAAATTGTTCTAAATTTCATGAGTATCATATACTTTTATTTCTTGAAATATT
AATGCTCATGAATAGTAACTAGTATGAAACAAATTATATACTCATAAAGCAATTGT
Done.