Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02107.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 992

Length: 1654
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31


Found at i:1420 original size:136 final size:137

Alignment explanation


    Indices: 1175--1420  Score: 476
    Period size: 136  Copynumber: 1.8  Consensus size: 137

       1165 AAGGAGATTG

                                                                             
       1175 AGTTGTGGGGCTTTGTATATGGATCAAAATATGATGAAATACTTGCTTTAAGTAGAACAGAGATG
          1 AGTTGTGGGGCTTTGTATATGGATCAAAATATGATGAAATACTTGCTTTAAGTAGAACAGAGATG

                                                                             
       1240 CCTGGAATTTGCCGATGGTAAAACACCCTTCGAGCATGATGCTATGCTTCATTAACTTAATCCTT
         66 CCTGGAATTTGCCGATGGTAAAACACCCTTCGAGCATGATGCTATGCTTCATTAACTTAATCCTT

                   
       1305 ATATTAC
        131 ATATTAC

                                                                             
       1312 AGTTGTGGGGCTTTGTATAT-GATCAAAATATGATGAAATACTTGCTTTAAGTAGAACAGAGATG
          1 AGTTGTGGGGCTTTGTATATGGATCAAAATATGATGAAATACTTGCTTTAAGTAGAACAGAGATG

                                          *              
       1376 CCTGGAATTTGCCGATGGTAAAACACCCTTTGAGCATGATGCTAT
         66 CCTGGAATTTGCCGATGGTAAAACACCCTTCGAGCATGATGCTAT

       1421 TTTACTTCTT


Statistics
Matches: 108,  Mismatches: 1, Indels: 1
        0.98            0.01        0.01

Matches are distributed among these distances:
 136   88  0.81
 137   20  0.19

ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32


Consensus pattern (137 bp):   
AGTTGTGGGGCTTTGTATATGGATCAAAATATGATGAAATACTTGCTTTAAGTAGAACAGAGATG
CCTGGAATTTGCCGATGGTAAAACACCCTTCGAGCATGATGCTATGCTTCATTAACTTAATCCTT
ATATTAC
Done.