Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02118.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3320
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34


Found at i:1722 original size:16 final size:17

Alignment explanation


    Indices: 1691--1723  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       1681 TGTTTGATAT

                             
       1691 GAGCTGCATCTTAGCAC
          1 GAGCTGCATCTTAGCAC

                             
       1708 GAGCTGCAT-TTAGCAC
          1 GAGCTGCATCTTAGCAC

       1724 CTAGATGCAT


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16    7  0.44
  17    9  0.56

ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24


Consensus pattern (17 bp):   
GAGCTGCATCTTAGCAC
Done.