Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02129.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5083
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34


Found at i:2429 original size:50 final size:50

Alignment explanation


    Indices: 2354--2454  Score: 202
    Period size: 50  Copynumber: 2.0  Consensus size: 50

       2344 AACTGTTGAA

                                                              
       2354 ACACAATGCATGATCAGCTACACCCAGGAATCCGCAAACCCTATCTTTCC
          1 ACACAATGCATGATCAGCTACACCCAGGAATCCGCAAACCCTATCTTTCC

                                                              
       2404 ACACAATGCATGATCAGCTACACCCAGGAATCCGCAAACCCTATCTTTCC
          1 ACACAATGCATGATCAGCTACACCCAGGAATCCGCAAACCCTATCTTTCC

             
       2454 A
          1 A

       2455 TCATACTCTT


Statistics
Matches: 51,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  50   51  1.00

ACGTcount: A:0.33, C:0.36, G:0.12, T:0.20


Consensus pattern (50 bp):   
ACACAATGCATGATCAGCTACACCCAGGAATCCGCAAACCCTATCTTTCC
Done.