Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00639.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 327
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32


Found at i:207 original size:26 final size:26

Alignment explanation


    Indices: 169--327  Score: 284
    Period size: 26  Copynumber: 6.2  Consensus size: 26

        159 TGATACAAAT

                                   *  
        169 TGATAATAGGTTAGGTAAATGTTTCA
          1 TGATAATAGGTTAGGTAAATGTTCCA

                    *                 
        195 TGATAATATGTTAGGTAAATGTTCCA
          1 TGATAATAGGTTAGGTAAATGTTCCA

                                      
        221 TGATAATAGGTTAGGTAAATGTTCCA
          1 TGATAATAGGTTAGGTAAATGTTCCA

                                      
        247 TGATAATAGGTTAGGTAAATGTTCCA
          1 TGATAATAGGTTAGGTAAATGTTCCA

                                      
        273 TGATAATAGGTTAGGTAAATGTTCCA
          1 TGATAATAGGTTAGGTAAATGTTCCA

                   *                  
        299 TGATAATGGGTTAGGTAAATGTT-CA
          1 TGATAATAGGTTAGGTAAATGTTCCA

                
        324 TGAT
          1 TGAT


Statistics
Matches: 129,  Mismatches: 4, Indels: 1
        0.96            0.03        0.01

Matches are distributed among these distances:
  25    6  0.05
  26  123  0.95

ACGTcount: A:0.34, C:0.06, G:0.23, T:0.36


Consensus pattern (26 bp):   
TGATAATAGGTTAGGTAAATGTTCCA

Done.