Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02143.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5777
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28


Found at i:4261 original size:14 final size:14

Alignment explanation


    Indices: 4242--4272  Score: 53
    Period size: 14  Copynumber: 2.2  Consensus size: 14

       4232 TATCTAAACT

                          
       4242 ATTGGATTAGCGGC
          1 ATTGGATTAGCGGC

                      *   
       4256 ATTGGATTAGTGGC
          1 ATTGGATTAGCGGC

               
       4270 ATT
          1 ATT

       4273 ATAATTCAAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.23, C:0.10, G:0.32, T:0.35


Consensus pattern (14 bp):   
ATTGGATTAGCGGC
Done.