Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02148.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 376

Length: 628
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28


Found at i:604 original size:17 final size:17

Alignment explanation


    Indices: 582--619  Score: 67
    Period size: 17  Copynumber: 2.2  Consensus size: 17

        572 ACCTTTTTTC

                             
        582 TTTACAACGAAAAGAAA
          1 TTTACAACGAAAAGAAA

                   *         
        599 TTTACAATGAAAAGAAA
          1 TTTACAACGAAAAGAAA

                
        616 TTTA
          1 TTTA

        620 AGTTCCTTG


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  17   20  1.00

ACGTcount: A:0.55, C:0.08, G:0.11, T:0.26


Consensus pattern (17 bp):   
TTTACAACGAAAAGAAA
Done.