Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02148.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 772

Length: 1287
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.27


Found at i:1263 original size:17 final size:17

Alignment explanation


    Indices: 1241--1278  Score: 67
    Period size: 17  Copynumber: 2.2  Consensus size: 17

       1231 ACCTTTTTTC

                             
       1241 TTTACAACGAAAAGAAA
          1 TTTACAACGAAAAGAAA

                   *         
       1258 TTTACAATGAAAAGAAA
          1 TTTACAACGAAAAGAAA

                
       1275 TTTA
          1 TTTA

       1279 AGTTCCTTG


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  17   20  1.00

ACGTcount: A:0.55, C:0.08, G:0.11, T:0.26


Consensus pattern (17 bp):   
TTTACAACGAAAAGAAA
Done.