Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02152.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1960
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.28


Found at i:1808 original size:14 final size:14

Alignment explanation


    Indices: 1781--1813  Score: 50
    Period size: 14  Copynumber: 2.4  Consensus size: 14

       1771 CAGAGCAGAC

                          
       1781 CTTCCCAAACATGG
          1 CTTCCCAAACATGG

                           
       1795 CTTCACCAAA-ATGG
          1 CTTC-CCAAACATGG

                 
       1809 CTTCC
          1 CTTCC

       1814 ATTCACTCAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  13    1  0.06
  14   12  0.67
  15    5  0.28

ACGTcount: A:0.27, C:0.36, G:0.12, T:0.24


Consensus pattern (14 bp):   
CTTCCCAAACATGG
Done.