Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02158.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5704
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32


Found at i:1674 original size:2 final size:2

Alignment explanation


    Indices: 1667--1697  Score: 62
    Period size: 2  Copynumber: 15.5  Consensus size: 2

       1657 CTTCATTATT

                                                          
       1667 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T

       1698 TTTCATTTAT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52


Consensus pattern (2 bp):   
TC

Found at i:3896 original size:31 final size:31

Alignment explanation


    Indices: 3858--3919  Score: 124
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       3848 CTAGGAAAGG

                                           
       3858 TGCATTGATTAGCGCCCTTTACTCAATCTAA
          1 TGCATTGATTAGCGCCCTTTACTCAATCTAA

                                           
       3889 TGCATTGATTAGCGCCCTTTACTCAATCTAA
          1 TGCATTGATTAGCGCCCTTTACTCAATCTAA

       3920 GTTGCTGTAT


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   31  1.00

ACGTcount: A:0.26, C:0.26, G:0.13, T:0.35


Consensus pattern (31 bp):   
TGCATTGATTAGCGCCCTTTACTCAATCTAA
Done.