Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02168.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4451
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33


Found at i:3764 original size:12 final size:12

Alignment explanation


    Indices: 3747--3778  Score: 55
    Period size: 12  Copynumber: 2.7  Consensus size: 12

       3737 CTAATATGGG

                        
       3747 AAGCCTTTGGTC
          1 AAGCCTTTGGTC

                   *    
       3759 AAGCCTTGGGTC
          1 AAGCCTTTGGTC

                    
       3771 AAGCCTTT
          1 AAGCCTTT

       3779 TTGGTTTAAT


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  12   18  1.00

ACGTcount: A:0.19, C:0.25, G:0.25, T:0.31


Consensus pattern (12 bp):   
AAGCCTTTGGTC
Done.