Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02180.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2452
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29


Found at i:2216 original size:45 final size:45

Alignment explanation


    Indices: 2152--2242  Score: 182
    Period size: 45  Copynumber: 2.0  Consensus size: 45

       2142 GACTGCTTTT

                                                         
       2152 ACAGCGTTGAGAACTATATTTCGCAATCGATGCTTTTATCAGGAA
          1 ACAGCGTTGAGAACTATATTTCGCAATCGATGCTTTTATCAGGAA

                                                         
       2197 ACAGCGTTGAGAACTATATTTCGCAATCGATGCTTTTATCAGGAA
          1 ACAGCGTTGAGAACTATATTTCGCAATCGATGCTTTTATCAGGAA

             
       2242 A
          1 A

       2243 GAGTTCAGGG


Statistics
Matches: 46,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  45   46  1.00

ACGTcount: A:0.32, C:0.18, G:0.20, T:0.31


Consensus pattern (45 bp):   
ACAGCGTTGAGAACTATATTTCGCAATCGATGCTTTTATCAGGAA
Done.