Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02192.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2353
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28


Found at i:2217 original size:2 final size:2

Alignment explanation


    Indices: 2204--2235  Score: 55
    Period size: 2  Copynumber: 16.0  Consensus size: 2

       2194 AATGTGTTAA

                   *                                       
       2204 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       2236 CTATCTAAAC


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47


Consensus pattern (2 bp):   
AT

Done.