Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02201.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 435

Length: 726
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33


Found at i:673 original size:6 final size:6

Alignment explanation


    Indices: 650--697  Score: 60
    Period size: 6  Copynumber: 7.7  Consensus size: 6

        640 AGTCCATTTG

                                                  *       *        
        650 TTTTATA TTTTATA TTTTTA TTTTTA TTTTTA TGTTTA TTGTTA TTTT
          1 TTTT-TA TTTT-TA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT

        698 CTTAGATTTC


Statistics
Matches: 37,  Mismatches: 4, Indels: 1
        0.88            0.10        0.02

Matches are distributed among these distances:
   6   26  0.70
   7   11  0.30

ACGTcount: A:0.19, C:0.00, G:0.04, T:0.77


Consensus pattern (6 bp):   
TTTTTA

Done.