Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02203.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4758
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36


Found at i:3189 original size:17 final size:17

Alignment explanation


    Indices: 3167--3205  Score: 78
    Period size: 17  Copynumber: 2.3  Consensus size: 17

       3157 TTGCTTAGAG

                             
       3167 TTGAAAAATGTATAGTT
          1 TTGAAAAATGTATAGTT

                             
       3184 TTGAAAAATGTATAGTT
          1 TTGAAAAATGTATAGTT

                 
       3201 TTGAA
          1 TTGAA

       3206 CTAACATACA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   22  1.00

ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41


Consensus pattern (17 bp):   
TTGAAAAATGTATAGTT

Found at i:3476 original size:16 final size:17

Alignment explanation


    Indices: 3443--3483  Score: 59
    Period size: 16  Copynumber: 2.5  Consensus size: 17

       3433 AATTAAAAGA

                             
       3443 ATAGAAAA-TTGAAGGG
          1 ATAGAAAACTTGAAGGG

                             
       3459 ATAGAAAACTTGAA-GG
          1 ATAGAAAACTTGAAGGG

              *      
       3475 ATGGAAAAC
          1 ATAGAAAAC

       3484 ATAATTTTTC


Statistics
Matches: 23,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  16   18  0.78
  17    5  0.22

ACGTcount: A:0.51, C:0.05, G:0.27, T:0.17


Consensus pattern (17 bp):   
ATAGAAAACTTGAAGGG
Done.