Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02205.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1892
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30


Found at i:182 original size:3 final size:3

Alignment explanation


    Indices: 174--202  Score: 58
    Period size: 3  Copynumber: 9.7  Consensus size: 3

        164 TTATCAATCC

                                                  
        174 CAG CAG CAG CAG CAG CAG CAG CAG CAG CA
          1 CAG CAG CAG CAG CAG CAG CAG CAG CAG CA

        203 ACAACAACAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   26  1.00

ACGTcount: A:0.34, C:0.34, G:0.31, T:0.00


Consensus pattern (3 bp):   
CAG

Found at i:272 original size:15 final size:15

Alignment explanation


    Indices: 252--282  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        242 ACAGCAGCAG

                           
        252 CAGCAGCAACAACAA
          1 CAGCAGCAACAACAA

                    *      
        267 CAGCAGCAGCAACAA
          1 CAGCAGCAACAACAA

             
        282 C
          1 C

        283 CCCTTTTTCT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.48, C:0.35, G:0.16, T:0.00


Consensus pattern (15 bp):   
CAGCAGCAACAACAA
Done.