Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02207.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 545

Length: 909
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.27


Found at i:736 original size:21 final size:21

Alignment explanation


    Indices: 710--759  Score: 100
    Period size: 21  Copynumber: 2.4  Consensus size: 21

        700 AGGTACTGTA

                                 
        710 GCAGCAGCAAGAAAGAAGGTT
          1 GCAGCAGCAAGAAAGAAGGTT

                                 
        731 GCAGCAGCAAGAAAGAAGGTT
          1 GCAGCAGCAAGAAAGAAGGTT

                    
        752 GCAGCAGC
          1 GCAGCAGC

        760 TTCTGCTTAA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   29  1.00

ACGTcount: A:0.40, C:0.18, G:0.34, T:0.08


Consensus pattern (21 bp):   
GCAGCAGCAAGAAAGAAGGTT

Done.