Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02219.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2816
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30


Found at i:1321 original size:42 final size:42

Alignment explanation


    Indices: 1196--1322  Score: 173
    Period size: 42  Copynumber: 3.0  Consensus size: 42

       1186 TTTCGCCTTC

                                        *       *  *  
       1196 TAAAAGGGATGAAAGGTTAAAAACACCTATACATACCCCTAG
          1 TAAAAGGGATGAAAGGTTAAAAACACCTGTACATACACCAAG

              *                        *   *          
       1238 TATAAGGGATGAAAGGTTAAAAACACCAGTAAATACACCAAG
          1 TAAAAGGGATGAAAGGTTAAAAACACCTGTACATACACCAAG

                 *                        *     *     
       1280 TAAAAAGGATGAAAGGTTAAAAACACCTGTGCATACTCCAAG
          1 TAAAAGGGATGAAAGGTTAAAAACACCTGTACATACACCAAG

             
       1322 T
          1 T

       1323 GGGCGATTTT


Statistics
Matches: 73,  Mismatches: 12, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  42   73  1.00

ACGTcount: A:0.46, C:0.17, G:0.18, T:0.19


Consensus pattern (42 bp):   
TAAAAGGGATGAAAGGTTAAAAACACCTGTACATACACCAAG
Done.