Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02232.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4215
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.34


Found at i:2905 original size:13 final size:13

Alignment explanation


    Indices: 2887--2914  Score: 56
    Period size: 13  Copynumber: 2.2  Consensus size: 13

       2877 AAATCAAGGG

                         
       2887 TGTAACTAGGAGC
          1 TGTAACTAGGAGC

                         
       2900 TGTAACTAGGAGC
          1 TGTAACTAGGAGC

              
       2913 TG
          1 TG

       2915 GAAGGGGTAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   15  1.00

ACGTcount: A:0.29, C:0.14, G:0.32, T:0.25


Consensus pattern (13 bp):   
TGTAACTAGGAGC
Done.