Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00654.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2039
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.27


Found at i:1824 original size:15 final size:15

Alignment explanation


    Indices: 1791--1824  Score: 50
    Period size: 15  Copynumber: 2.3  Consensus size: 15

       1781 GTAAATTCTT

                      *   *
       1791 CTTTTTTTTTTTTTT
          1 CTTTTTTTTTATTTA

                           
       1806 CTTTTTTTTTATTTA
          1 CTTTTTTTTTATTTA

                
       1821 CTTT
          1 CTTT

       1825 GATGTAAATA


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.06, C:0.09, G:0.00, T:0.85


Consensus pattern (15 bp):   
CTTTTTTTTTATTTA
Done.