Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02244.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2016
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.36


Found at i:172 original size:84 final size:84

Alignment explanation


    Indices: 31--200  Score: 340
    Period size: 84  Copynumber: 2.0  Consensus size: 84

         21 TCCTCCACTC

                                                                             
         31 TCACCATATTCTTTCTCCTCCTCCTGTTCTTCATCCAGTTCCCTTCTTCATCCATTCTGTAAATT
          1 TCACCATATTCTTTCTCCTCCTCCTGTTCTTCATCCAGTTCCCTTCTTCATCCATTCTGTAAATT

                               
         96 TTTCTATTGAAGAATTTCT
         66 TTTCTATTGAAGAATTTCT

                                                                             
        115 TCACCATATTCTTTCTCCTCCTCCTGTTCTTCATCCAGTTCCCTTCTTCATCCATTCTGTAAATT
          1 TCACCATATTCTTTCTCCTCCTCCTGTTCTTCATCCAGTTCCCTTCTTCATCCATTCTGTAAATT

                               
        180 TTTCTATTGAAGAATTTCT
         66 TTTCTATTGAAGAATTTCT

              
        199 TC
          1 TC

        201 TTTTTCCTTT


Statistics
Matches: 86,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  84   86  1.00

ACGTcount: A:0.18, C:0.30, G:0.06, T:0.46


Consensus pattern (84 bp):   
TCACCATATTCTTTCTCCTCCTCCTGTTCTTCATCCAGTTCCCTTCTTCATCCATTCTGTAAATT
TTTCTATTGAAGAATTTCT
Done.