Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02248.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8004
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31


Found at i:5494 original size:6 final size:6

Alignment explanation


    Indices: 5473--5512  Score: 53
    Period size: 6  Copynumber: 6.5  Consensus size: 6

       5463 GTTTAAGAAC

                                         *       *        
       5473 TTTTTA TTTATTA TTTTTA TTTTTA CTTTTA TCTTTA TTT
          1 TTTTTA TTT-TTA TTTTTA TTTTTA TTTTTA TTTTTA TTT

       5513 ATCTTCTTTA


Statistics
Matches: 29,  Mismatches: 4, Indels: 2
        0.83            0.11        0.06

Matches are distributed among these distances:
   6   23  0.79
   7    6  0.21

ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78


Consensus pattern (6 bp):   
TTTTTA

Done.