Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02251.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4132
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34


Found at i:3367 original size:27 final size:27

Alignment explanation


    Indices: 3329--3381  Score: 106
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       3319 TCTCGCTTTC

                                       
       3329 CATTAGATTTTCTAGTTCCTTTGTGAA
          1 CATTAGATTTTCTAGTTCCTTTGTGAA

                                      
       3356 CATTAGATTTTCTAGTTCCTTTGTGA
          1 CATTAGATTTTCTAGTTCCTTTGTGA

       3382 GCTTACTCTT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   26  1.00

ACGTcount: A:0.21, C:0.15, G:0.15, T:0.49


Consensus pattern (27 bp):   
CATTAGATTTTCTAGTTCCTTTGTGAA
Done.