Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00658.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 562

Length: 937
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32


Found at i:577 original size:66 final size:66

Alignment explanation


    Indices: 471--667  Score: 331
    Period size: 66  Copynumber: 3.0  Consensus size: 66

        461 CAAACAAAGA

                      *    *                                *        *       
        471 CTATTCAAGTGTCACGGTTGGTGACCAAGAATGGAGGTCCTTATTACAAGGAGATGAAGGAACGG
          1 CTATTCAAGTTTCACAGTTGGTGACCAAGAATGGAGGTCCTTATTACAGGGAGATGATGGAACGG

             
        536 G
         66 G

                                                         *                   
        537 CTATTCAAGTTTCACAGTTGGTGACCAAGAATGGAGGTCCTTATTGCAGGGAGATGATGGAACGG
          1 CTATTCAAGTTTCACAGTTGGTGACCAAGAATGGAGGTCCTTATTACAGGGAGATGATGGAACGG

             
        602 G
         66 G

                                                  *              *           
        603 CTATTCAAGTTTCACAGTTGGTGACCAAGAATGGAGGTTCTTATTACAGGGAGCTGATGGAACGG
          1 CTATTCAAGTTTCACAGTTGGTGACCAAGAATGGAGGTCCTTATTACAGGGAGATGATGGAACGG

        668 AACAAAACAT


Statistics
Matches: 123,  Mismatches: 8, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  66  123  1.00

ACGTcount: A:0.28, C:0.15, G:0.31, T:0.25


Consensus pattern (66 bp):   
CTATTCAAGTTTCACAGTTGGTGACCAAGAATGGAGGTCCTTATTACAGGGAGATGATGGAACGG
G
Done.