Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02252.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6478
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34


Found at i:6158 original size:241 final size:241

Alignment explanation


    Indices: 5732--6217  Score: 672
    Period size: 241  Copynumber: 2.0  Consensus size: 241

       5722 CTTCTTACAT

                             *                                               
       5732 TCTTCTTTTTCTTCAGTTGTTCACCACATTTCATTCTTCAAATGTCGCAATCATTAAATCCTAGT
          1 TCTTCTTTTTCTTCAGTCGTTCACCACATTTCATTCTTCAAATGTCGCAATCATTAAATCCTAGT

                            **          *            *  *    *               
       5797 ATCACACAATCGTTCATTTATAGTTTTAGCGTTTCGTATTCTAATACAAGCCTTCTTTTACCTTC
         66 ATCACACAATCGTTCACCTATAGTTTTAACGTTTCGTATTCCAACACAAACCTTCTTTTACCTTC

                   *                                        *             *  
       5862 AAGTCATTGATGTCACAAAAAATTGAATAAGGTAATTTTTGAAACCATGAATTCTTATATTGGCT
        131 AAGTCATCGATGTCACAAAAAATTGAATAAGGTAATTTTTGAAACCATAAATTCTTATATTGACT

               *                       *                   
       5927 TATTTTTTGCTTTATTAAATTATAATTTAAAATG-AGAACTTGTTTA
        196 TATGTTTTGCTTTATTAAATTATAATTCAAAATGCA-AACTTGTTTA

                         *          * *             *           *            
       5973 TCTTCTTTTTCTTTAGTCGTTCACTATATTTCATTCTTCAGATGTCGCAATCGTTAAATCCTAGT
          1 TCTTCTTTTTCTTCAGTCGTTCACCACATTTCATTCTTCAAATGTCGCAATCATTAAATCCTAGT

               *  * * *                         *          *                 
       6038 ATCCCATAGTTGTTCACCTAT-GTTTCTAACGTTTCTTATTCCAACATAAACCTTCTCTTT-CCT
         66 ATCACACAATCGTTCACCTATAGTTT-TAACGTTTCGTATTCCAACACAAACCTTCT-TTTACCT

             *    *        *       *                     *                   
       6101 TGAAGTTATCGATGTTACAAAAATTTGAATAAGGTAATTTTTGAATCCATAAATTCTTATATTGA
        129 TCAAGTCATCGATGTCACAAAAAATTGAATAAGGTAATTTTTGAAACCATAAATTCTTATATTGA

                                                            
       6166 CTTATGTTTTGCTTTATTAAATTATAATTCAAAATGCAAACTTGTTTA
        194 CTTATGTTTTGCTTTATTAAATTATAATTCAAAATGCAAACTTGTTTA

                
       6214 TCTT
          1 TCTT

       6218 TTGCTTATAT


Statistics
Matches: 214,  Mismatches: 28, Indels: 6
        0.86            0.11        0.02

Matches are distributed among these distances:
 240    4  0.02
 241  206  0.96
 242    4  0.02

ACGTcount: A:0.29, C:0.17, G:0.10, T:0.44


Consensus pattern (241 bp):   
TCTTCTTTTTCTTCAGTCGTTCACCACATTTCATTCTTCAAATGTCGCAATCATTAAATCCTAGT
ATCACACAATCGTTCACCTATAGTTTTAACGTTTCGTATTCCAACACAAACCTTCTTTTACCTTC
AAGTCATCGATGTCACAAAAAATTGAATAAGGTAATTTTTGAAACCATAAATTCTTATATTGACT
TATGTTTTGCTTTATTAAATTATAATTCAAAATGCAAACTTGTTTA
Done.