Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00659.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3432
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.32


Found at i:1779 original size:146 final size:147

Alignment explanation


    Indices: 1514--1810  Score: 454
    Period size: 146  Copynumber: 2.0  Consensus size: 147

       1504 TTCAAAGATC

                               *  *            *                *            
       1514 ACCTCTCTCTCTCTCTCGCTGGGGGAGAGTGTTAGTATTTTATTGTTGACTAGTCAGGAACATTT
          1 ACCTCTCTCTCTCTCTCGCAGGAGGAGAGTGTTAGGATTTTATTGTTGACTAATCAGGAACATTT

                              *      *                                       
       1579 TCTTTTGTTGTCTAAATGTTTCTTGGTCACTCTGCACTAACCTTTAATCTTCACTATATCTAGGT
         66 TCTTTTGTTGTCTAAATGCTTCTTGATCACTCTGCACTAACCTTTAATCTTCACTATATCTAGGT

                   **        
       1644 AACAAGTTTGGAGACCA
        131 AACAAGTCAGGAGACCA

                          * *                         *       *              
       1661 ACCTCTCTCTCTCTGTGGCAGGAGGAGAGTGTTAGGATTTTGGTT-TTGAGTAATCAGGAACA-T
          1 ACCTCTCTCTCTCTCTCGCAGGAGGAGAGTGTTAGGATTTT-ATTGTTGACTAATCAGGAACATT

                                            *                                
       1724 TTCTTTTGTTGTCTAAATGCTTCTTGATCACTTTGCACTAACCTTTAATCTTCACTATATCTAGG
         65 TTCTTTTGTTGTCTAAATGCTTCTTGATCACTCTGCACTAACCTTTAATCTTCACTATATCTAGG

                              
       1789 TAACAAGTCAGGAGACCA
        130 TAACAAGTCAGGAGACCA

                
       1807 ACCT
          1 ACCT

       1811 AGTGGCTAGA


Statistics
Matches: 136,  Mismatches: 13, Indels: 3
        0.89            0.09        0.02

Matches are distributed among these distances:
 146   83  0.61
 147   51  0.38
 148    2  0.01

ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38


Consensus pattern (147 bp):   
ACCTCTCTCTCTCTCTCGCAGGAGGAGAGTGTTAGGATTTTATTGTTGACTAATCAGGAACATTT
TCTTTTGTTGTCTAAATGCTTCTTGATCACTCTGCACTAACCTTTAATCTTCACTATATCTAGGT
AACAAGTCAGGAGACCA
Done.