Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02258.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5420
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.35


Found at i:2836 original size:15 final size:15

Alignment explanation


    Indices: 2789--2841  Score: 56
    Period size: 15  Copynumber: 3.6  Consensus size: 15

       2779 CTTATATAGT

                           
       2789 TTAATTAAAT-TTAA
          1 TTAATTAAATCTTAA

                 * *       *
       2803 TTAATCATA-CTTTAT
          1 TTAATTAAATC-TTAA

                           
       2818 TTAATTAAATCTTAA
          1 TTAATTAAATCTTAA

                     
       2833 TTAATTAAA
          1 TTAATTAAA

       2842 AGTTAATTAT


Statistics
Matches: 30,  Mismatches: 6, Indels: 5
        0.73            0.15        0.12

Matches are distributed among these distances:
  14    7  0.23
  15   22  0.73
  16    1  0.03

ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49


Consensus pattern (15 bp):   
TTAATTAAATCTTAA
Done.